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Northeastern University

Kakatiya University

Led development of scalable NGS pipelines (Nextflow, Snakemake) for 23K+ tumor/germline/cfDNA samples, integrated with internal LIMS for real-time QC and metadata tracking.      Built Docker-based reproducible workflows with CI/CD via GitHub Actions; ensured compliance with HIPAA and institutional standards. Collaborated closely with wet lab and clinical teams to optimize patient cohort selection and biomarker identification, contributing directly to improved clinical research outcomes and patient care. Implemented bash, awk, and sed scripting in Linux HPC and AWS (SLURM, SGE) to automate preprocessing, QC, and data harmonization steps. Authored SOPs, validation reports, and study documentation for clinical trials, enabling reproducibility and regulatory readiness. Contributed to development of AI-driven stratification tools leveraging survival analysis and multi-omics features.

Bioinformatician II

Developed Python/R pipelines for integrating multi-omics datasets (ATAC-seq, GWAS, eQTL) to identify genetic biomarkers for autoimmune pathways, supporting clinical research efforts to enhance patient care.    Applied fine-mapping, LD score regression, and logistic regression for disease risk modeling across multi-ethnic cohorts. Led data harmonization and QC for NIH-funded studies aligned with FAIR principles. Delivered reproducible analysis packages and documentation for publication, grant support, and internal reproducibility.

Data Analyst/Bioinformatics Analyst

Developed automated ETL workflows in Python and SQL to integrate clinical datasets, enabling real-time patient data analysis and improving clinical decision-making.   Built biomedical outcome models (>85% accuracy) to support hypothesis-driven trial decisions. Developed interactive Tableau dashboards for patient and lab data visualizations

Software Developer in Data Science

Built and maintained WGS/RNA-seq pipelines on Linux HPC and AWS; optimized pre-processing with Samtools, Trimmomatic, and FASTQC.  Used Docker/Conda to ensure environment reproducibility for regulatory and collaborative use.

Bioinformatics Data Analyst

Supported clinical data warehousing and backend optimization; automated ETL scripts for compliance and internal audits

Jr Oracle DBA

SAI KRISHNA REDDY GOTTAM

English

Bioinformatician

Programming

Networking

Data Analysis

statistical analysis

Database Management

Algorithms

Machine Learning

Quality Control

Data Visualization

Data Mining

Visualization

Genomics

Molecular biology

Mathematics

Statistics

Scientific computing

Sequence analysis

Software engineering

Systems Biology

Genome Annotation

Next-Generation Sequencing

Genomic Sequencing

Bioinformatics Pipelines

Genomics Analysis

Bioinformatics Software

Sequencing Data Interpretation

Bioinformatics Software Proficiency

Communication

Conflict Resolution

Emotional Intelligence

Leadership

Problem Solving

Time management

Interpersonal Skills

creativity

Critical thinking

Teamwork

Active Listening

Adaptability

Problem-Solving

Decision-making

SAI KRISHNA REDDY GOTTAM

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